The way my tank is set, I can't install it above the water line. My box isn't exactly like yours, it is longer and doesn't have the flaps on the large sides, only on the small sides. But that shouldn't be an issue with the recently added plastic clamps (not so sure about the translation here, maybe plastic bands?)
The rubber seal is more "delicate", with sort of an L shaped cross-section. I couldn't find it like yours in plastic, only in glass.
My first plan is to use a lot of silicon grease, since I have it here. If that doesn't work, I'll do the final test with silicon glue, but then I won't be able to iterate on the CO2 functionality, if the insides don't work, it's gone.
I gave up trying it sealed with silicon grease only and went for the silicon glue at once. I added as much glue as I could fit and waited 2 days for it to dry. But during my pressurized test, it leaked all around. I think maybe the glue doesn't adhere so well to the plastic.
And with that, I gave up on the compact reactor. This weekend I bought some PVC connections and started assembling a standard tubular horizontal reactor. No clear plastic, the insides will be a mystery.
I have this irrational aversion to having an excessively large gas pocket, thinking it could be wasteful, so after some basic math I came to the conclusion that a longer reactor with a smaller diameter will have a smaller gas pocket than a shorter reactor with a larger diameter.
Gas Volume = L * pi * D² / 8
L = A / D
Gas Volume = A * pi * D / 8
So, the larger the diameter, the larger the gas volume for the same surface area. That's for the ideal reactor geometry with the water limit at half the tubes height.
Considering the restriction of having the diameter at least twice the diameter of the tubing used, ideally even larger to account for the connections, in order to have the water level limited at half the reactor's height, I built my reactor with 50mm external diameter (~47mm internal). The sizing using the smaller area (smaller pH drop) gave me a 36cm long tube, so I rounded it to 40cm. Again I had some issues with the sealing during high pressure tests, but I already made a few adjustments that I believe will be enough. Just waiting for it to dry. I also think that my high pressure test may be a bit extreme, since the actual working pressure will be close to 1m of water column... And I'm testing with at least 4 times that.
Overall I'm hopeful that it will work this time and I should have it installed next weekend.
Just to recap, the tank's surface area is 1,3m x 0,5m.